Why your Shopify orders aren’t syncing to Cin7 and how to fix it fast

Struggling with Shopify orders not syncing to Cin7 Core? You're not alone, and it’s fixable. This guide breaks down the top sync failure causes (like SKU mismatches and unmapped locations) and walks you through a proven 12-step checklist to resolve them fast. Plus, it shows you when to escalate and how to book a free sync audit with Fiskal’s integration experts. Perfect for eCommerce teams facing post-go-live chaos or scaling pains.

SYSTEMS AND SOFTWAREECOMMERCE

Pierre Goldie, Co-founder @ Fiskal

5/30/20254 min read

Why your Shopify orders aren’t syncing to Cin7 and how to fix it fast

By Pierre Goldie, Co-founder & CGO @ Fiskal

Cin7 not receiving Shopify orders?
You’re not alone

Why Shopify orders fail to sync with Cin7: common root causes

At a glance, syncing Shopify to Cin7 seems straightforward, but under the hood, it’s a fragile web of SKUs, automations, and system handshakes that can break in surprising ways. The most common culprits:

  • SKU mismatches: When Shopify SKUs don’t align with Cin7 item codes

  • Unmapped locations: Orders tied to locations that haven’t been integrated

  • Missing customer data: Incomplete customer profiles can cause sync rejection

  • Improper automation triggers: Poorly configured workflows stall automation

Fiskal has rescued dozens of companies from such “integration purgatory” including clients like Play Pits and Ghurka, who faced post-go-live issues due to fragmented systems and under-scoped implementations.

  • Orders not syncing from Shopify to Cin7? It’s fixable.

  • Most sync failures come down to just 3–4 core issues.

  • This guide shows you how to diagnose and fix them, fast.

Orders not showing up in Cin7? We get it. Few things are more stressful than missing backend sales while customers wait. You’re not alone; over 70% of eCommerce operators face sync errors post-integration, especially when scaling fast or juggling multiple systems.

In this guide, you’ll learn:

  • The most common reasons Shopify orders fail to sync to Cin7 Core

  • How to resolve them with a proven 12-step checklist

    Where to look for silent failures like unmapped SKUs or API blocks

  • When to escalate to an expert (and how to book a free audit)

Let’s turn your order sync issues from roadblock to resolved—fast.

Cin7 ⇄ Shopify sync flow diagram:
how orders should move

This data-flow diagram illustrates the proper order of operations between Shopify and Cin7:

Shopify Order Created → Cin7 Receives Order via API → SKU & Location Validation → Customer Mapping & Tax Code Sync → Inventory Deduction & Sales Recording

Common Breakpoints:

  • API handshake fails

  • Location mismatch

  • Unmapped tax code or payment method

  • Duplicate SKUs

Fix Shopify to Cin7 sync issues:
the 12-Step checklist

Don’t call in the cavalry just yet. These are the exact fixes we've seen work for dozens of brands caught in sync limbo. Run through this list first, it might save you hours of head-scratching (and some emergency coffee):

  1. Verify Integration

    • Check that the Shopify integration is active in Cin7 Core.

  2. Capture Setting

    • Set to “Paid” (recommended), or adjust as needed:

    • Created: syncs instantly

    • Fulfilled: syncs after fulfillment

  3. Order Lock Date

    • Make sure it includes the orders you’re trying to sync.

  4. Tax Rules Mapped

    • All Shopify tax rules must be mapped to Cin7 Core.

  5. Location Mapping

    • Map all Shopify locations to Cin7 for inventory handling.

  6. Payment Mapping

    • Link Shopify payment methods to Cin7 Core accounts.

  7. Assign Customer

    • Every order must have a customer assigned in Cin7.

  8. Handling Edits

    Orders edited after capture?

    • Void in Cin7

    • Delete sync log

    • Re-import order

  9. Auto-Retry

    • Confirm “Auto-Retry Sale Order Sync” is ON.

  10. High Volume?

    • API throttling can delay sync. Watch for “To be loaded” status.

  11. Fulfillment Status

    • Incomplete fulfillment can block sync. Ensure correct status in Shopify.

  12. Use the Logs

    • Always check the operations log for sync failures.

Fix Shopify to Cin7 sync issues:
the 12-Step checklist

Don’t call in the cavalry just yet. These are the exact fixes we've seen work for dozens of brands caught in sync limbo. Run through this list first, it might save you hours of head-scratching (and some emergency coffee):

  1. Verify Integration

    • Check that the Shopify integration is active in Cin7 Core.

  2. Capture Setting

    • Set to “Paid” (recommended), or adjust as needed:

    • Created: syncs instantly

    • Fulfilled: syncs after fulfillment

  3. Order Lock Date

    • Make sure it includes the orders you’re trying to sync.

  4. Tax Rules Mapped

    • All Shopify tax rules must be mapped to Cin7 Core.

  5. Location Mapping

    • Map all Shopify locations to Cin7 for inventory handling.

  6. Payment Mapping

    • Link Shopify payment methods to Cin7 Core accounts.

  7. Assign Customer

    • Every order must have a customer assigned in Cin7.

  8. Handling Edits

    Orders edited after capture?

    • Void in Cin7

    • Delete sync log

    • Re-import order

  9. Auto-Retry

    • Confirm “Auto-Retry Sale Order Sync” is ON.

  10. High Volume?

    • API throttling can delay sync. Watch for “To be loaded” status.

  11. Fulfillment Status

    • Incomplete fulfillment can block sync. Ensure correct status in Shopify.

  12. Use the Logs

    • Always check the operations log for sync failures.

Still can’t fix Cin7-Shopify sync errors? Here’s what to do next

Even with this checklist, some sync issues run deeper, especially in systems rushed through “go-live” without proper scoping or training.

That’s where Fiskal comes in.

Book a Cin7 Health Check Audit: personalized sync remediation

Here’s what you’ll get:

  • A comprehensive audit of your Cin7-Shopify data flows

  • Identification of mapping gaps, workflow failures, and automation misses

  • A personalized sync remediation roadmap

Perfect for ecommerce teams who’ve outgrown DIY fixes or are unsure where to begin.

Book your FREE Cin7 Health Check

Book your FREE Cin7 Health Check

Download, diagnose & book your sync audit

Still wrestling with Cin7 ghosts? Let’s get ahead of it, before another batch of orders slips through the cracks.

Frequently asked questions

Why are my Shopify orders not syncing to Cin7 Core?

Common reasons include SKU mismatches, unmapped locations, and missing customer data.

How do I know if the Shopify integration is active?

In Cin7 Core, go to Integrations → Shopify → scroll to the bottom to confirm active status.

Can Fiskal help post go-live?

Yes. We specialize in post-implementation sync audits and remediation.

Written by:

Pierre Goldie, Chartered Global Management Accountant & Co-Founder at Fiskal
Specialist in eCommerce operations, financial systems, and post-implementation ERP recovery.

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